Well, doesn't it just seem that the "box" which your website has allocated for a logo is too small? You need to ask the designer to make that box bigger.
Yeah, the "Automatic" setting is a dog. Make sure you change it.
Maybe it was this? https://www.facebook.com/groups/askdamien/posts/3170551753005003/
Much more detailed info in the Layers & Masks Class of course.